Prototype covers were made in planning stages of but didn't make it into the final prints of various VeggieTales videos, albums and others. While most of the prototype covers were not meant to be available publicly, some of them so far have been leaked via magazines, advertisements, DVD menu features/Easter eggs, newspapers, etc. However, given by concept sketches or alternate covers for some videos such as Madame Blueberry and The Ballad of Little Joe, there may be more than one prototype cover known to exist for any specific video, album and more.
Where's God When I'm S-Scared? was the only episode whose prototype cover had made it into the final print of the episode. This is the original 1993 VHS cover from the first 500-copies print run, despite Big Idea not having a distributor at the time
Are You My Neighbor? was the first episode to start the trend of cancelling out its prototype cover before its release (found on the original 1995 VeggieTunes CD)
Rack, Shack and Benny (found on The Baltimore Sun Wednesday, 29 Nov 1995 newspaper article, Page 167 and The Tampa Tribune Saturday, 9 Dec 1995 newspaper article, Page 144)
Joshua and the Battle of Jericho! was scrapped due to a change to the title taking place around 1997 (found in Joe Sapulich's concept art portfolio)
2nd prototype cover for Josh and the Big Wall! (found in Joe Sapulich's concept art portfolio)
Madame Blueberry (as shown with the prototype VHS cover) shows the original 1994-1997 logo and theme song from the previous nine episodes, but they revised the box cover due to revamp the logo and theme song taking place in 1998. (found in Joe Sapulich's concept art portfolio)
2nd prototype cover for Madame Blueberry, similar to the final print (found in Joe Sapulich's concept art portfolio)
2nd prototype cover for Madame Blueberry in 3D form (as seen in the actual episode, in the Stuff Mart book)
The End of Silliness? (found in the December 12th, 1998 edition of the Palladium-Item)
Duke and the Great Pie War, originally titled "The Princess and the Pie Wars" and also features an early version of Petunia Rhubarb, who in this case was originally going to be a cucumber
NOTE: Some reprinted covers that are very identical to the final but have minor differences are marked with an asterisk (*)
Where's God When I'm S-Scared? (2003 reprint/10th anniversary exclusive), with a gold spine instead of a bronze one and also says "Limited Edition" instead of "10th Anniversary Edition" *